NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314864_0070479

Scaffold Ga0314864_0070479


Overview

Basic Information
Taxon OID3300033805 Open in IMG/M
Scaffold IDGa0314864_0070479 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)823
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004502Metagenome / Metatranscriptome435Y
F026928Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0314864_0070479_127_414F026928GAGMPCPFFMFWQLCVALCEADGEGVAVAAADPLLAAVVPDGDDDVDEVVDAGVDELLVAALATAMLTPSPTPSAPAPTAAAMMILPRLDLNVSSSSW
Ga0314864_0070479_513_821F004502N/ATQQFRAAWQAAADAVNEWTHRVSEATHEAVDKIEPAVRAVVEAGRSAMTGEWRACHCRCGTAHPDDSGVCDGRAVMTRRVGEADVSMCAPCAVAQGVAEMKP

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