NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364946_009271

Scaffold Ga0364946_009271


Overview

Basic Information
Taxon OID3300033815 Open in IMG/M
Scaffold IDGa0364946_009271 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 31_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1729
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024280Metagenome206N
F051037Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0364946_009271_434_745F051037N/AMVKLRDHEKMKGLWPPVFEGPHSFWDKHHPGGEWGDLHQVKWVVPDRKGESPYIKIIVHWDEVDFRGVITDEDTAFLKKVYEAMKSRGLRKTLEEVGDLQVDF
Ga0364946_009271_975_1451F024280N/AMALISIESRKGKPTCAICAAERVETVATPAGRFALCPDHVTTFAARRLSPEELALVIRKKQPPPAAWQPASCALCANPADLVLDEPEGIFAFCQPHFIRYVLLALRPHEHALLSGRLTPDQFLARLSSKYYFDGQADQPYIEDLDDPAYSVTTPLWEG
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