NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000398

Scaffold Ga0334980_0000398


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000398 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20500
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050992Metagenome144N
F057997Metagenome135N
F062576Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000398_12954_13568F062576AGGMMTIELPNSWHDISIEKFPLIYDITRDKDIDPIDREIRVISILTGITVAEVEKIRIDQLKELIKNVNFIFKMEFPNSVEMFKHNGYRWVVNYDITKLSAGDFISLSKLTESEESIIGNLPQLVAMFVKPYKLKWFKLKEVEMDYAEKVEHIKSINVGIVYPLCVFFCKVIEGLYPHIEDYLVKQMNEARMTMESELNELKNKNT
Ga0334980_0000398_15325_15522F050992AGGMNEEIKQSLLNWESMGKNYSPTFNWTELNEIAIKSGNKPFNLGCSECRRQLLEFLLATIKDGISK
Ga0334980_0000398_5062_5664F057997N/AMENKKQTFKEVFSDMKELFKDIFQDEVKDLKFVDYKAKDGSIVRTDTEEIAIGSKLQVITPDGVMDLPVEVTEMVIMVNEMPMKVYVENGVVKGIEPEEVMEEPVMEEMASDNNEQFEAKFAELNERLSKLESALGLSNQALEAANASILAQTDLNRKLFSLIEKVADAPSVEPKSTSKENFKKSNTTSLEEFRKKVYNY
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