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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033816 Open in IMG/M |
| Scaffold ID | Ga0334980_0000584 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17039 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (31.82%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014953 | Metagenome / Metatranscriptome | 258 | Y |
| F026503 | Metagenome | 197 | N |
| F063471 | Metagenome / Metatranscriptome | 129 | N |
| F077042 | Metagenome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334980_0000584_10674_11306 | F077042 | N/A | MNPKVITAALAAVVVCFAGVGVLTVKSVSKHIAASDKEFDMTSNVLSPLFDIYGLAIVDGQAKASKGLINAKEFCDSLAKLQAEAERLLAEFGNPAELVAQHKLVAAYLKKARSACDAGQIETLNSPAMTAELYAVIEPMTALINKALHEELTISRTHKDAADRALLTFERFASVAAGLGMVFAVAPWIGAKGKKPAVVVAKVRKKKTKR |
| Ga0334980_0000584_12569_12709 | F014953 | N/A | MSTEQALQNLYAGSRLAPLPADQHDLLRKCAEKLAEALKPKEPKAE |
| Ga0334980_0000584_4378_5175 | F026503 | N/A | MIEIEASFSRLEFQLAKLANAAKVDLGLVIKEEAKYAIQTIVKFTPPKSKQQGANAVRADFSRLAEPLVYQDLQAKATKGGFYTSMARYVRNRQVEKLRALLRNPKLSHYYGMRLLENEDALRLEHRRKQNARGRITGKPDQLAFGSDFKKYRNEIEGRVGWTVSGWNSSAKVTGARYKKFSDKLKPQASGNKLFGSVRSSFGPQPFIKATAHNVKIPNYQRMIDGAINSRIKTTTKKVAAVLANRAVNLGFTRVGGAMPIKTAA |
| Ga0334980_0000584_8357_9322 | F063471 | N/A | MYSNSAAIFRADIAGVVEQAKDFEAGLIGTAVMPILDVPVRAGQYPSFVLKEGQLLKSDMKTRSPYSAYARGTRAFVQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKIFDSGTFTATNSGTAYTTANLATFDVGADVQEALDRLLSKGESTTNTKVVIPYPVWTRIRASTKFQNRLRGTGLSTDTILNASTQAAAEVFGVAEVLIGRASYDQAPEGVAFSAANAWANTFIWVGSVTQAGAGYFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQYTAEKVVNANAGQLISTQFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |