NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0001180

Scaffold Ga0334980_0001180


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0001180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12172
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F009743Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0001180_10435_11067F001326GGAGMATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYSVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVANDPVCTWVTAAQVMSYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESSYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
Ga0334980_0001180_1980_2378F002421AGGAMKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTKPEQNEVDAAIVHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0334980_0001180_3377_3907F001872N/AVAIAKAKAGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRRSEKNPKAGRKEALVFIDKLVANANDLGLQCILDYYPEPQGRAWRCDRYAWLKYDKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0334980_0001180_9258_9557F009743AGGAGMKIKLQLRRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSSSPLYSDYCCWMHTILKIKGEQVGDNWREWISKNPDIDIMPVLDETDTNPTDAAPTAAN
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