NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0001575

Scaffold Ga0334980_0001575


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0001575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10535
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010236Metagenome / Metatranscriptome306Y
F078654Metagenome116Y
F082345Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0001575_3114_3347F010236AGAAGMKKMQDVAGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAAVATVVQKLAQASLDGQLTIEEINEAFGAKKK
Ga0334980_0001575_4932_5180F078654GGAGMIDYAAILSRRYSGKQWTLNGDDYAGLTWLSDDAKPTKAVLDDLWSEVQAEIVSEKSKLIADRQSALSKLGLTADEITALFG
Ga0334980_0001575_901_1158F082345AGGMTIVMVTWADTHSGGTGWTPISDIDQDEYLIQTCGFLLATSDGGKADHVTVFQSRTSDDDLDHILHIPVAMVRKIQVCSPQTLTQ
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