 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033816 Open in IMG/M |
| Scaffold ID | Ga0334980_0001685 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10185 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (75.86%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000714 | Metagenome / Metatranscriptome | 924 | Y |
| F001460 | Metagenome / Metatranscriptome | 690 | Y |
| F002071 | Metagenome / Metatranscriptome | 596 | Y |
| F004666 | Metagenome / Metatranscriptome | 428 | Y |
| F007468 | Metagenome / Metatranscriptome | 350 | Y |
| F014250 | Metagenome / Metatranscriptome | 264 | Y |
| F020171 | Metagenome / Metatranscriptome | 225 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334980_0001685_2121_2279 | F004666 | N/A | LKGDNQMATKREYLKSKGITVGVRGRFSGAAKQALAEAEKNGVKFTAEVKTK |
| Ga0334980_0001685_2754_3047 | F014250 | GAGG | MRDINTEFHPRLQKLVDMGETGTNILHGELKNLMLEAETQLDIAQKTEDESGEAMDSMERTYWEGQLDALTEVYAMTYNLAFAINERTQKNEFSRPV |
| Ga0334980_0001685_3199_3378 | F007468 | GAGG | MYNQLVEYMKLHLISLNQDMDKDLNVESKINIQGQIMAIEHLLSVATDIMNNSNERVYG |
| Ga0334980_0001685_3477_3656 | F001460 | GGAGG | MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDYA |
| Ga0334980_0001685_3823_4038 | F020171 | AGGAGG | MSEQFIDTIAEHITGAMIQEIGEELFDQWSYNNLESGAEYAENQFMQYASMELKQQYNEYYGYKEGDEFYL |
| Ga0334980_0001685_5048_5452 | F000450 | AGGCGG | MGDRANFGFVQSNGETIVLYGHWAGHNMLGKLADAVIKARPRWNDESYATRIVISQLIGDQWNMETGWGLSVNNILDNEHKIAIVDFKQQTFSLHEEDERNNLDNKVNGMKNDAIFTQDLSVFCDKYAMDEILV |
| Ga0334980_0001685_6001_6459 | F000714 | GAGG | MEESTTAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNGVYQDKINTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA |
| Ga0334980_0001685_8832_8975 | F002071 | AGGA | MEIGQTYTTTQSGVTGVIKAVDNHPSGVNRILLDVNGTERWTSAPAN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |