NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0002356

Scaffold Ga0334980_0002356


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0002356 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8681
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039602Metagenome163Y
F041725Metagenome / Metatranscriptome159Y
F097205Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0002356_1681_1887F041725GGAMVDTIERYYKKYCEKPDEANARAYCLWRLRLHRRLKNDKTLLDSINEARNLGLNDDRPGKTCWDCEFT
Ga0334980_0002356_6063_6248F039602AGGAGMKRKKSRVENVGVQVLQGVIDTYYLTVPYDKKNRVIPSSVECAYNSRYFSPQQTINMLRA
Ga0334980_0002356_8057_8437F097205GAGMTISVPFQSQFTWRKLGYLYFTNSLDYREILEQNPQWKVTELPPLGAQIRVQASANTVGTPGGLSQGSFVFGLPTGQQQASIFPYDTEESYRIALNRYTLQGVIDREEINGITFDSTQAITGQQNG
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