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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033816 Open in IMG/M |
| Scaffold ID | Ga0334980_0015920 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3237 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F011938 | Metagenome / Metatranscriptome | 285 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334980_0015920_1100_1297 | F011938 | GGAGG | VIEYYDTTHIVYIYSEKCYGTVEKLGAWASTVKYTADGIEYNELMENDEFTIIDEIVFKHIEESK |
| Ga0334980_0015920_1297_1533 | F000671 | GAGG | MEKILCYSCNKSKNKLDVRKSSLMPINLLVCETCNSAKLEPRWVVILAGRSNGPDHVKEFIIKRRYIGSEITASELLI |
| Ga0334980_0015920_1562_1891 | F002060 | N/A | MDINYTSIVIAISAAIVSGMGTAIIAAIKDNKKEKRRQYEREQDHLKLEIKDLKISLYKIERELTEWKDKYYNAIQELISVKSELEETLLKLSFIDHHIEDLEALDREF |
| Ga0334980_0015920_790_1116 | F000473 | GAGG | MFIDKSADKQREHFKHGINHWTGEPAKPVFYTEEMKKKVHEIKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGIKKEMVIDYVKRVKKLIESYGVRCEMEGKPSDRVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |