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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033817 Open in IMG/M |
| Scaffold ID | Ga0373875_000898 Open in IMG/M |
| Source Dataset Name | Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19443 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (52.94%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | University of Toronto, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 43.65699737 | Long. (o) | -79.3957 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000335 | Metagenome / Metatranscriptome | 1276 | Y |
| F000451 | Metagenome / Metatranscriptome | 1124 | Y |
| F002448 | Metagenome / Metatranscriptome | 558 | Y |
| F007212 | Metagenome / Metatranscriptome | 355 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0373875_000898_12896_13423 | F000451 | AGGA | MPRFQTVIRRARFIYSPYTAYEMQGFAQVLADAIRARIQSGQNIYDQAAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRTVIGFLDEAMSGRKQTASQIAFYNNQREHQWGVSPRDRAALLAVMLNYRPLVVAAGGTELAGFRQYGAAVYFSALRPAA |
| Ga0373875_000898_16775_17272 | F002448 | N/A | MISPKTLLGEWVTALQALPNLLQALGGNANHIQFYSENAVVFGKPTQNNIRLAILSMPPGSILVAWQGTAPGRLGNMLVFVHDFSLYLRAPEEADVGYEDLFNWIVNDIPAGGTLRMLHTQVDPNCEPMDFYLPSARRNTIVISGDGATFEYFEIPVRLIESYNP |
| Ga0373875_000898_17259_17600 | F007212 | N/A | MSDWSALAIDVNAIMQQAFGEPVVYQPVQGGFAVGYPLTITAIRHTRERAESGTAASAEEISINPANLPNFPQPGDWVTAWGVQFVVGPVRQPDAYGMAQLSLVARQSPDDQP |
| Ga0373875_000898_8607_9023 | F000335 | GAG | MPGNLQQAAPNGVMPLSLCTAFTELREYLQLQNQYHDGTIHRSQLAQTSRRTFRLSKRLSTSQLAVLYNFWVSQNAGLTPFAFYNPFDVLAGQQIGSNYDSTGNNTVGRVTVVFRGNWAQATDLARSNVQGLELVEVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |