NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373875_001351

Scaffold Ga0373875_001351


Overview

Basic Information
Taxon OID3300033817 Open in IMG/M
Scaffold IDGa0373875_001351 Open in IMG/M
Source Dataset NameLaboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11696
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Source Dataset Sampling Location
Location NameUniversity of Toronto, Ontario, Canada
CoordinatesLat. (o)43.65699737Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041367Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0373875_001351_263_670F041367N/ALLIFRSVHAADLCGGGADGPRGCPDANDVTCGKCGLVRAVDDTNAPGACPQCGGWQFVVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAVHFSIPWSDVTAEEVRGLQILKEERDRYQREQLQKQPHAFPS
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