Basic Information | |
---|---|
Taxon OID | 3300033818 Open in IMG/M |
Scaffold ID | Ga0334804_001030 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 16510 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000995 | Metagenome / Metatranscriptome | 810 | Y |
F007196 | Metagenome / Metatranscriptome | 356 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334804_001030_4197_4925 | F000995 | N/A | VAADGRGSTVDHLTARRLAIWLAARPQQPVFAQGLGRFAETGMIDPRLKMQLRMRARSGTYTDRSQAARLLEYCIGRGTDLGPISENFGAACNQVDQADVMLARLHDRAREGLALPEQSWPETDGPGIIALAQRNPDSQTVSLILDATTANTALFAIAAHADEREAHIREVQRYGETLPEGSYGRRNRQAIAARETRVAARLRAVERAYRIAVERNVMYRAPESTGSHRSSQHTADKEIELE |
Ga0334804_001030_7305_7505 | F007196 | GGCGG | MDMRELQDPYDLPFPDDSGRWPPGRPEYAIVVDRLRGWQPGGPLSLAEVLETGRTRQPEPDLEAEP |
⦗Top⦘ |