NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334804_002495

Scaffold Ga0334804_002495


Overview

Basic Information
Taxon OID3300033818 Open in IMG/M
Scaffold IDGa0334804_002495 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9810
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016200Metagenome / Metatranscriptome249Y
F041053Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334804_002495_2758_3366F041053GAGGMSSRELGPEWVLSAYLQNAEARGQDDISELAIVACRLWPRIQAHARKELANKTSDDTMVLATGVWESVLLSVAKTMRRSNGKGRTIRNLEAYLFGAFHHRFNRSLRRERRRREMVEYLPLGRDLERLRHAHDSKAVADLDRLIQVKQTIENMDDWTRTVSMARLAGYSWKEIAEYLRLTEPQAKLRFRYALGRLRARFGSAA
Ga0334804_002495_3700_4119F016200AGGMQVWLAAAAVLLFAVGGLLWVRSRPSGQTAAVVVLDLRGRAPVRGENPPETSQPSLEVPRNARNLNLELPIGSNEGAYDVALINPNGAELFRTSATAKLEDHIVVLRADVNLAGISPGSYFLGLRQPGVEWMRFPIRVL
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