Scaffold Ga0334837_005281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334837_005281

Scaffold Ga0334837_005281

Overview

Basic Information
Taxon OID	3300033823 Open in IMG/M
Scaffold ID	Ga0334837_005281 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6987
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3531	Long. (^o)	19.0476	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031304	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334837_005281_3059_3547	F031304	AGG	LGGRYTLGRSQAKFNNHKWELSFQQYAAIVASGRCFYCGNPLPTAAAGLDRKENEDYSWDTVFPCCGKQPKAKGPRGCNETKSHEIAPILLFVRRWYERSGKLPTEREFEDSVRQFEARRDRAFEIISKLEAGEVRKLKRAKSVAEGLAALRSDVLDFAPET

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