NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334837_025276

Scaffold Ga0334837_025276


Overview

Basic Information
Taxon OID3300033823 Open in IMG/M
Scaffold IDGa0334837_025276 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2003
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3531Long. (o)19.0476Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057830Metagenome135N
F096473Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0334837_025276_1275_2003F057830AGAAGMFNSLLLDSNDSVIADRLSRLQDSLRELTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIRSKPAIVGDLSQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSIGIGSSGSAVNAISNLSSTTVGTSFQWSGSSLEMLLSFPSPTIVNRLQIALDTYTGLEITNLTSSPDGLVFNDVLADL
Ga0334837_025276_2_1267F096473N/ALSSATDYTVDQYGNFTPITLAAAATTVDIFFEEEFPAYQCSIDQVNWSPLLMLDPARPYPDGATLFPPIAWSMDSKGNLALPVTDEIGTPTGMYIEIGSAVPTQAYLLQAVGQASPNTVGATALLEIDFAQLSYLTVLRMTPFTTFPMILTKVEIQGITTNTRQTVWSGSTPIDQPTALHLDQIMGINPLVSKVFLTFYQPNYSLKQQTVTPPDALRLNVMSQLQAVLPFNARNVVPPPAVVYTGAQYEFGVADVSGEAWTASSGVFVSGPNRFVGIPELIRFDAVSTDGISNATYTGTYVPPNLINKIPSAQNSSGSLAHMMSGESLAMSEDTSGGPVDFYLCFQAFDNTGTVIKQNLTGYLLPTGGSGQCFSFTYPFINGWSIGSGALSQIDHVDFYIKIVHRSSSAVAQHYMLQVTG
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