NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334840_170963

Scaffold Ga0334840_170963


Overview

Basic Information
Taxon OID3300033824 Open in IMG/M
Scaffold IDGa0334840_170963 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)563
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0334840_170963_335_529F038518GGTGGMRFGMLDSGEEPVYRLGTYPVKVMRWIRHLLFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0334840_170963_3_326F003764GAGMQIQLDSPYSQDENPAALLAGAEIEAAGLHRCLKIIRLWGQFSALSRPRRDQMIEEEQRLANLYAATLFEIGSAFGLRAADELKVRIDAACILDDWECPPAEQGLLFP

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