NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334848_000526

Scaffold Ga0334848_000526


Overview

Basic Information
Taxon OID3300033827 Open in IMG/M
Scaffold IDGa0334848_000526 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12745
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F012741Metagenome277Y
F038945Metagenome164N
F069592Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0334848_000526_11857_12297F004581GGAGGMQHAEIYNGHAGRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLLNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLKATAAYSIERAGAHSRHILAPTRHPVQLER
Ga0334848_000526_12439_12744F038945N/AFAASKKAALREFSVLATNVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTPQELER
Ga0334848_000526_6326_6610F069592AGGMNENHTGHTVLSPLFAQNLVRHLEQLNKVDQFTESSNLALPFALFQLFQTDTPVASSNEFPALLGGRPLPRSSRAASSATHPSGMKTPQRPLTN
Ga0334848_000526_6619_7206F012741N/AMKEESMFTPQSRNPLGVLSLTNSAGGIFQSLKRQTAAAGFIAYCGIISAVLGLWMWLWRDTTLEDKTLTRTVGAALVLSSFFFYQHLRIGFGAFFLILTSTGIGIAVHYSNHSLIHGDRPEIPAIVLIAIGLIAYFAQTRYLPGFIFLLASSATIIGILWFKSAFFCPIIMVIAGVVLIILGMLIRSLAMFNSFM
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