NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334848_000618

Scaffold Ga0334848_000618


Overview

Basic Information
Taxon OID3300033827 Open in IMG/M
Scaffold IDGa0334848_000618 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11680
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0334848_000618_5039_5542F017951GGAGMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPHGTVANTVGKLREFAAESIQ
Ga0334848_000618_5596_5964F004301N/AMEPSVNARNAKRQLDTLRKQLATAHADLEDVDYNLSIVEMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0334848_000618_5973_6347F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAGLHRCLKIVRLWSQFSTLSRTRRDEMVEEAQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDNWECPPAEQGLLFPIPNEPTTEASPVTARK
Ga0334848_000618_6854_7183F003942AGGAMIHRYEDVELIEVHSEYLECSFTVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTIAQPGMAEAIEMQRQAGHTIYADHLSAMLYGTGLNPARS
Ga0334848_000618_7208_7714F003389GGAMQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHEPLELSEPISCDHFCEEEDSPLSPDEIDKLCERLNMGFCN
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