NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334850_030662

Scaffold Ga0334850_030662


Overview

Basic Information
Taxon OID3300033828 Open in IMG/M
Scaffold IDGa0334850_030662 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F007884Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0334850_030662_176_574F000092GAGVKQHLGRQSGVQNVEVSLIDGKVQVTPKEDGQIDPMQLLKATYDSGVTAAEMDVVARGKIVKDSSGDLALQVEPNRSFTFEPNELSKSLESLAATQTFVTVRGQLYKKPSGKKKADLSVPLKLLVLEVQKKE
Ga0334850_030662_714_1004F007884N/AYRPYEAKDATREWFIGPALTWQHSQDDQIGGLTQHGSGGDVLLAGVTTYAGVRPGMHIWLGMDWDVVHSTSAAFMPIRRHVSFGITQQFRFHLLGK
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