NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334854_006213

Scaffold Ga0334854_006213


Overview

Basic Information
Taxon OID3300033829 Open in IMG/M
Scaffold IDGa0334854_006213 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2921
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026629Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0334854_006213_3_1742F026629N/AMKVLLIDPQDNPDEGPWAAQRWDRIVDVGMGGQNSYERWSHRFQCPVTTLSSLRCGFDDFRQVRRLLDLGWGQLIDEHGLDWWEIMSLLLHGELETLILLQRFAQTVGRGDEVHVSRPGLHANLLRSLLATGVNIFPVRRGSQKGGLAHYLRVSRKLSTPQIIDVFWDKYDAGYQLRGRFARRRQSSPQAVVLLPSAYVNVSRTGIAYANTFPEENFLLVTTRRSGWVQDPPRNVTATWLSVYASVCDRSAENANMESRWRSLLKELLRTTEFEILGRLGHLENFPRWIQRGFEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLAQARGLASIASHHGALDGRYVFKRSYGDVIWAKGKMEEDYLVRKCGVPQERVEIAAPALPADWTASENSERPDFRPYLLFFSEACEVSGGRQEEFYRDILPQLADLAMDTGRELIVKLHPAESHRERASMVARILSAKQKSVTRVVSGPLTEDLLAQAWFGITILSTVAFECALRGIPCFLCRWLEFWPYGYVEQFIRFGVGIGLNDPGEIQRIPEYLQANPVSADVRENCWKPASQGRLRELLTASRKAYTA
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Institute for Fundamental Biomedical Research
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