NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326764_000648

Scaffold Ga0326764_000648


Overview

Basic Information
Taxon OID3300033830 Open in IMG/M
Scaffold IDGa0326764_000648 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10242
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y
F090626Metagenome / Metatranscriptome108Y
F097670Metagenome / Metatranscriptome104Y
F099549Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0326764_000648_1459_1953F090626N/AMSRIVKFENIYFGRNSLVKLFANKTHLENSTDYDGTTLAFLLDVSDFTNTNALLTHFAIVNGNEIRPILMDWNLRTIHGRLLILLDQLPGPHDTKMLLKRFESIIENQRPETIKYIAGQYARALTDAKGLHPIYNFLVQRIYLLKSIGIKKSEEEVRRLAEIYR
Ga0326764_000648_3913_4425F097670N/AMMNYKIFDKEIFFETDHIITINLKTNEINHEEKLYFYDGKELKELKDFQEYNLKQYEIAQKIQEEFTKFSTKHAKPPIGYITIGNIIFEYMLNRNNVILIAYANISKIEDEISKEITNDIIKIIYKSKMIFNKEWNFESIQNLSPEVKDNTTKIIEKALKSAKMILKNNL
Ga0326764_000648_5387_5803F099549N/AMDTNPQYTYAIPDLKTMFQIDFGNIIREIVSLLTYSDISTDTRTFDNEELKNKLRAAIAYALGLLASTWGYSMSAKVQQDVLIAKESLKALFDRIVRDPELTYPDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
Ga0326764_000648_9133_9348F077497N/AMDKEQINKIEEIIERHLFEETNNTDYELKKMDVIIKYLIYQKLKDIDERLNNIDQTLYESANPGIWDDEKW
Ga0326764_000648_9326_9535F087443N/AMGQRKNYWMTFLDSDNINYIDKEITKTAVDLDLDPSEIRAWIFKAFIYDPEIRAKIIEYIKKNGQGTNQ
Ga0326764_000648_9636_10043F062912GGAMDPQAILAETYNLFLISDIVENESEIDRELEDLLANKDYNNMAKTLIYALMYTLNNDPAYRNIKQIYINDAIDLLYTIDRMGFNDERIMKKFINLLYQFYSYSLQYKINFIADKEKREWVKAKLDELVNIIQWEQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.