NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326764_000812

Scaffold Ga0326764_000812


Overview

Basic Information
Taxon OID3300033830 Open in IMG/M
Scaffold IDGa0326764_000812 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8536
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099548Metagenome103Y
F101501Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326764_000812_2220_2690F101501AGGMMGMVNMERIIWENVDAIRGIVKRAFNGEYMGYTNDAIPFIRIRVKGGIIEVPITNTVFKPILEKAYKTLDDYEKRRLLAYEVGGAFKVHPYYIQLLILDAIQLSQLLNIRDVNTLVKTLLEHPLSQERAGMIGRQGVEWLVRRMIEVGLLAMPSP
Ga0326764_000812_3380_3727F099548AGGGGGMQSDLPWNVRRVVARLIVIAIKGAPGSCISITPGLLGKVLGDGVVREALRLLRAMSLHGILNRVSGAYTLCSTDNPELWVTVKRLPIDEAVAWLLWLIEDASDGKTIGNGPSYEL
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