NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326764_001540

Scaffold Ga0326764_001540


Overview

Basic Information
Taxon OID3300033830 Open in IMG/M
Scaffold IDGa0326764_001540 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5723
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099548Metagenome103Y
F101501Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326764_001540_1717_2202F101501AGGVLINTITNKPLVETIEEVLRGSIGTIKSIVGSRLNGEYIGYRLDPIPFIIIRVGESLTEVPITNPAFKAILEKAYRVLEDYERRRLLAYEVGGIFKIQPYQAQLLILDAIQLSKLLGIRNANTLVKTLLEHPLSQERAGMIGRQGVEWLVRRMIEVGLLSM
Ga0326764_001540_2696_3025F099548N/AMDVMRVVARVIAILIKGAPGDCISITPSLLGNMIDSGSVKEALRLLRVLYIQGILDRGYGAYTLCLEDNPQLWATVKRLPIDEAVTWLLWLIEDALDGKPINTGPSFEL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.