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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033830 Open in IMG/M |
| Scaffold ID | Ga0326764_002811 Open in IMG/M |
| Source Dataset Name | Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3923 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.7265 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F061983 | Metagenome / Metatranscriptome | 131 | Y |
| F075084 | Metagenome / Metatranscriptome | 119 | N |
| F080245 | Metagenome | 115 | N |
| F080247 | Metagenome / Metatranscriptome | 115 | Y |
| F081547 | Metagenome / Metatranscriptome | 114 | Y |
| F085905 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326764_002811_1403_1795 | F061983 | AGGAGG | LKKYVFKVKVVPVKVINEEGVLSEQEFEHVKKTCIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYSDIIDVKKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAYETCTKFIM |
| Ga0326764_002811_1788_2168 | F080247 | N/A | MIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVISFYIKEKDIYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT |
| Ga0326764_002811_2513_2785 | F081547 | GGTGG | MPYLRGVFINFGEETYYLSCGIVNGGNLDAETYTIKEPELMMVRLGRDLYIVTSELKLLIPVEPVRVLLNSETSKVYNEMLSQGNEVKPA |
| Ga0326764_002811_3036_3293 | F080245 | N/A | VWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT |
| Ga0326764_002811_3563_3922 | F075084 | GAG | VRPCQKDICLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIAN |
| Ga0326764_002811_40_495 | F085905 | AGG | MLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARYLLPYSVLEVIRRHLKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |