Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_000618 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22412
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (69.44%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

22412

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (69.44%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F038570	Metagenome / Metatranscriptome	165	N
F040491	Metagenome / Metatranscriptome	161	N
F042758	Metagenome / Metatranscriptome	157	N
F061873	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_000618_10820_11173	F040491	AGG	MDIVQVQTFLRYIAELPEVQFIAASILVNTALAVAASIRNDDFHLPALANFLWRHLLPYVVAYTSIRIAADELGLQAVATATWIIIEASLIGRIVSSLHELGIPLPENLAKFLKKDH
Ga0308413_000618_16360_16974	F031690	AGGAG	MNQNQYPQNLFYCATSNVIVGTERCRLYLFASNAEQAAKYTWPTKTRRKTRYVVPCERLYGLRSPEEIEAAAANYGFVDSYPHICDVMEDHKNLASVIVETNALRWALSFLPDDGTKTVNIDDKGLSIHGVPLGGIALYSAEMLVRSRPLRLAFEQMPRDETAHVDILGHRNARALKISLGTEAHYVFDYRNGFTAFIPRGEER
Ga0308413_000618_16971_17282	F029920	N/A	MISMSDLERAFREERPLKGFIAPGLALSYQPREHLAIGRANRRPDDDDIALVITLAREAFIIIACEPQREVVESNGVTWYLARWPLQRESVADHLPLRERRNR
Ga0308413_000618_18031_18423	F061873	AGGAGG	MNEKMNETMTLDDLIRRGVEIREKRIAEERARIAAFHEQLARESAEREREIRAILPAPLDDLAEVDAGVTHAYIYVRKPFPGEGKVRIYASKKDDQWHLLEFAAYNPDGYYLKFQTLEEALAFAAGALEI
Ga0308413_000618_19099_19674	F026459	AGGAGG	MNSQKVEMLRSFNQIESTIRPPVNSLSMFIAALTAMGSGETVQRALYRAERCAPNDVIKDAEELIDVLHEIGEGVTALKLERRLAELREGQSSDAIAGLWELVDMLPHDAYMAFGFAVESAQIRCGEHPNPQELLADIDFDREGFRFGSAWQFWGNRSPEAIRTAREAFIAALLHAAGLSDEPDYPEPLAD
Ga0308413_000618_20515_20817	F026171	GGAGG	MNRSLRKLREAVKVARLADLPVAKALKALADMPEARAFQIEPEVLRRILLESLPEQYATFLFDQAGYRVEMSLADLAYFARYDEILAELAISVILYLDKE
Ga0308413_000618_2189_2419	F025421	GGA	MIDLSKVRRIDRNAPGSFMEYARLQATVAEGDLMAIARALEAYGVDVQTLSFNELVDVVKHIAGEPTPLAITNVTE
Ga0308413_000618_2416_3279	F038570	GAG	VKDGSVTINHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPRIYTIEYGAPGAEYRVVGGILKEWMLRYEANAGVTERWSFIGRSVQANALTGSLPTRVVTPVLSRHASWFVDFTGTAHGTTQVPGTVIEAEWSINTNRHLKMFEGSQPLDWGEGRWEAQLSMTVELNVHGKAWVDFVTTGPVTFNIRANFVETANTRELRIDFVGLLSEPVELFGDRDGNMTAELTFKALVAPPLNNWMQIRVINGVGTLP
Ga0308413_000618_3538_3948	F022604	AGGTGG	VLSAVNAVHAVVAAVPGIVAAYTTVPMSANTPALPMALVTPISENRRQHAHELVRIETLVRVRIVHSPVSQGVTTSQQSALYTLADDVMVKITDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISIAVRVIEKI
Ga0308413_000618_4490_4876	F042758	AGGAGG	MKPTDFLNIAGRLPAQAITGATNTTSIDMQLLRGVAAVCVVGNASTPPSFTIQSSADNTTFTNLAGKAVSSIPANSECVINVRDEDLPDGHRWIRAVVNGTATVSVVFIGTLARDNPPAKLASTTIVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_000618

Overview

Ecosystem & Geography

Associated Families

Sequences