NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_000667

Scaffold Ga0308413_000667


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_000667 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21539
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F031016Metagenome / Metatranscriptome183Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_000667_11104_11436F031016AGGAGGMATICIWKGVRRVVLGDDIEFVEYETFIGEELGAVWEEENSRGTQTVFYHTEGGKIVVHQVLWSRWENEATYAYIHVFPALEGVNGAAAMFWRELRKAGLIPPRTVELGE
Ga0308413_000667_16650_16883F032180AGGAMWWKIEEIPEQELEDWTKAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGCEAPDGAYLVERWVRKKKGWMLYE
Ga0308413_000667_16867_17337F005028AGGAGMCDDDLRNDDLRAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDTQAVAELMLTVGYRPTFIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYTDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKHRNVVED
Ga0308413_000667_17330_17695F018115AGGAGMSDEAERFVRWYAHLAEDTPLDRHAARALLRRALTDREALAEYLLNNECTPALLGEFINRHRNDALSDAARGASLRLASRTLRAPDCLEERDRWAVLEWIQRGVVPSARILRRLCEEIDD
Ga0308413_000667_17688_18098F008499GGAMKSRSEPRWKRKERDALRALQALFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERADE
Ga0308413_000667_18082_18552F004307AGGAMFKELISNSGNGRERPELNGAYIGRFLGVKERQRPTFETRNAPEPVMEDVFVFEFDIEDDDGQPVRVSKWVRKPTRLTHPGKSGKVTNLYRVLAALYGVSVMTDAQLERAEEFVQEAVGREYQLTIETKPSGWVEIVHIAPVRARMRKTKEDEVPF
Ga0308413_000667_4435_4791F005631GGAGMRVSVSVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKPSKTSRIVENTASYARYVYGMPQARVHSGRWASLRDAAEAAKKEAIAVLKERGR
Ga0308413_000667_50_499F004791AGGAGGMDKPAEIYDIDTIRVDRNALTIRDAASVLNNELTAPVVARLVRKAIGTQADRFPLRALKAVYERVLPQIFEPDAAIRARVEGMRPNVATITLGEYHQFLDASERRIAFPEVAAVILTKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308413_000667_513_1025F005302AGGAGGMSHSGVLAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGVGVITNVTLSALDPSDADPYVAMVTVRTPSLRQYTLGSSPTNLNPA
Ga0308413_000667_8628_8798F006418N/AVREIVIDSGDDFKIIFDRESKDYAVEYRGEPVGWRPTEAEARRLVEQLRYEDAKRA
Ga0308413_000667_9483_10157F007976AGGAMSSTGLSNFLRVALDVQATPYPGIHVADGVAAATDGVMLVAKKFDLVFLRGEGAISPKAAKVLAALAGATWIGSVAVVGNRVTVTAQSTWYDEKVGAEVAGAYREVTLPEFYCPRAPVARILAVLTDESRGWETVAENPNVKVLKEMSARDYVALIDNPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLNVRRSSSGWLAFGDQWGYTFTVTPFVKHN
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