NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_001414

Scaffold Ga0308413_001414


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_001414 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13556
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_001414_1002_1451F004791AGGAGGMTKPAEIYDIDTIRVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGMRPNVATITLGEYHQFLDASERRIAFPEVAVTMLTKAYGDDILNEPYAAAALLLKKIFDSVAEEGNE
Ga0308413_001414_10422_11096F007976AGGAMPSTELSNFLRVALDIQATPFSGIHVADGVAAATDGVMLVAKKFDLVFLRGEGAISPKAARVLEALAEGTWIGSIEVDGNRVTATAQTTRYDEKTGGEVAGEYCDVSLPEFYCPRAPVKRMLGVLTDESRGWETVAENPNVKVLKEMSARDYVALADEPRNGGELFRMKVDGDTHWYSVGQLRRGLRLFGKNSRLSVRRSSSGWLAFGDQWGYTFAVTTFVKHN
Ga0308413_001414_11238_11564F002982AGGAGGMKIAFERTPTAICAVLTEPGECDRIISVSRASDAIDVFALDVSPAAYKPLDALFALSRVVCVEIERLEGGWRVEVAYWTKGLGTLAQYETDAAMLSEALARCVWALAR
Ga0308413_001414_11561_11917F075805AGGAGGMRVRVWYGWRAVRGNRDVSQFAWIEFDGEPLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYADLEDAARRGWRDDLVRVGAYDAPVRELDEWLSQYEEEE
Ga0308413_001414_1464_1976F005302AGGAGGMSHSGVIAGLYAGNFAVEISTDATTWTAVSNATVKVDDIELSRPSGEAYVGGSSDYATITVGKREPVELTLTFLYNEASNSAANTVYGLFESATPRLAVRWSPRGLVSDARAYATSNDGSTAGLGVITNVTLSALDPSDAEPYVLMATVRTPTLWQYTLGSNPTNLNPAS
Ga0308413_001414_1987_2448F002970GGAGMSYSSVTDIIELLAGLAVQYNSAVVPVRRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLTRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPSV
Ga0308413_001414_5428_5778F005631GGAGMRVSVSVDLDNALRKLLPRAPQIEAALDAGATAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSRTSRIVENTASYARYVYGMPQARVHSGRWASVRDAAEEAKKEAIAVLKGR
Ga0308413_001414_8854_9057F016404GGAMTTEELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFDEQPNADQSVLVIVDEAAFVKTV
Ga0308413_001414_9054_9284F010840AGGAGMNLPFSQPLDKITYGALAAATVVILAWALREFTGIDLPAEVQSALAVIIGYVVSYHIPLTEAEAEAIARKYYRNYK
Ga0308413_001414_9563_9733F006418N/AVREIVIDSGDDFKIIFDRETRDYAVEYRGEPVGWRAFVEDARRLVEQLRYEDAKRA
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