Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_002294 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9896
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9896

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F056952	Metagenome	137	N
F058499	Metagenome	135	Y
F089597	Metagenome	109	N
F096158	Metagenome	105	N
F098168	Metagenome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_002294_2594_2872	F056952	GAGG	MKRPFRYQLRDVFGNVVYSSSSFRYTIRRLAQSLVKPIIYSPQGRRHVVFYLENGVVKCYVGNFGESRKSVEERVIRLFRASDIARRVRRHV
Ga0308413_002294_2981_3601	F089597	AGTAGG	MPRRLSWDEVAACIDRESVERYGRYLRGVVEGETYVPKATAMPSLVNRTIVLGVVYDWCRRRHWRQPLPVTVRAFSWVARYCYPFHPVFARLGIESEDVVEALEWIANDSYSFRFAPATYGVTIVGEHRNGDRRYQHYFAPVPLVAPGIDDPTAVPFRLRMATRLVMEAAFRAICVVDDDGNYDEIAIRITARDLLEVAAPLVTPD
Ga0308413_002294_3935_4267	F058499	GAGG	MPSPLARYERAYAELLSRYLIGPLAKYRDLAGLRLDADGVFHLVVPNRHGDLVLYSCPYLDGRVVNVDRIPGRRISLRAAVNHDGWDVAVWAERVLIENQFATSEITLPS
Ga0308413_002294_6022_6717	F096158	GGAGG	MAEVGTHRFVIESTQFAKLERALSVALPAARSLGVDAGIFWLRDSIFAATPYASIGLASCDLELEESLECIAISQLAARAFLFELQTHRVRYLERIDFVATRDRVVFLFEYDRKSKSSTPPLFSRYSSSWRPRMTPREHYELLTAHRPYFECTLATREIRKKLRGHEDYGYVVLEDFPDVISHVTVSRSLLLAFLEAAKDEDTTFRLEYYEGQRCVVCRAGDVIAILSVID
Ga0308413_002294_8610_9680	F098168	GAG	VEVRDGKLSFSTRSGIAVGEVRFDADDEKVVIEEEGAAAFDASEFVSSIDRAAGEVVEIASGPDRDYIRFAATEYAFPKVAYSDHDRVSVSSSESSIVRFAFELEGIFARTVFASKARVQSESRFVLFRSGESGFVVFSTNEKRYAIVRSRVDADAESKVLAYLDYDSAVLAHSFLGATDERVEVGVDTNGWLVLAGESFSVGLATLSMPLRANRIDYLGIDRKFRDRVHRAATIPYESFVRAYRSIEPVVSKEWRTIGFEFGESSVTLSATSDLGVSAKSRIDFESIVPANLRSTIYLDSKYIGDFLAAVRSVVSAEALESTKIVFEREEDSKGIVFFGIESDDWRYGMMAISRD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_002294

Overview

Ecosystem & Geography

Associated Families

Sequences