NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_002711

Scaffold Ga0308413_002711


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_002711 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8857
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N
F042758Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_002711_3985_4371F042758AGGAGMKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTATTPPSFAIQSSANNATFTNLAGKSVTSIPANSEAVINIRDEDLPDGHRWIRAVVNGNATVAVVFIGTSARDNPPAKLTTTTIVS
Ga0308413_002711_4913_5323F022604GAGGMLSAVNAVHAVVAAVPGIVAAYTTVPMSVTTAALPMALVTPISENRRQHAHELVRIETLVRVRIVHSPVAQGITESQQLALYALADAVMTALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISIAVRVVEKI
Ga0308413_002711_5492_6442F038570AGGAGMPATHLRRIQLGQQTAFATPVAATSILRGVKDGSVTINHNDMVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQIYTMEYGTTGAEYRVVGGIIREWTLRYEANAGVTESWSFIGRSVQATTMTGSLPTRVVTPVVSTHASWFMDNIGTAHGTTPIPGTVIEAELNINTNRHLKMFEGSQPITWGEGRWEAQLTITAEFNATAKAWVDALLTDRVARNIRANFVETANTRELRIDFVGLIAESPELFGDRDGNMTVELTFKALVAAPLNNWLQIRTINGIATLP
Ga0308413_002711_6439_6669F025421N/AMIDLSKVRRIDRSAPGSFMEYARLQAIITEGDLMAIARALENYGVDVRELSFNELTDVIKHIAGEPTPLGDTSATE
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