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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033886 Open in IMG/M |
| Scaffold ID | Ga0308413_002751 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8774 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022604 | Metagenome / Metatranscriptome | 213 | N |
| F025421 | Metagenome / Metatranscriptome | 201 | Y |
| F028964 | Metagenome / Metatranscriptome | 190 | N |
| F038570 | Metagenome / Metatranscriptome | 165 | N |
| F059420 | Metagenome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308413_002751_109_519 | F022604 | GAGG | MLSAVSAVHAVVSAVPGIVAAYTTVPMSVTTATLPMALVTPVGENRRQHAHELVRIETLVRVRIVHSPISQGITESQQSALYVLADAVMTALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISVVARVVEKI |
| Ga0308413_002751_1677_1907 | F025421 | GGA | MIDLSKVRRIDRNAPGSFMEYARLQSTIAEGDLMAIARALESYGVDTSQLSFNELVDVVKHIAGESAPLPVTSATE |
| Ga0308413_002751_4889_6649 | F059420 | AGGAGG | MEIELSRGGTTLAQLHYRSVPGQYSWVLRDFQGDLIDEVEVLTREALGGRTLIAGQQGRARRIVIVLDVQGTNMVNLHAAIGELESHVRWRKGTPLELRARAQAANPWSVIEVVLEQMTAQFEDDQYRATVTMRFACHSVYWKETIIPPIPASNSTLTGNAFVVDLRTMTFTPITGITEAVRNIDYRAASGEWILFGGTQVWRAPLTGGAATIIGSVSGATGIRGCVAHDGSILAIAQGVNQLVRFTYPSSSPTVLGQFNGLILRIRRFGDQYVSVGEFSQYRSTSGLAGMVTTDINGNILNTFSPFPSSVIFPGGGRIRDVLIKDNIGIAIANRGSSPQQSWVAVWSNQVAPYYVAEGESTWWPFEIDQSSPIDDVTICAESPIHAGRTFNTLCRLRNLSGIVPYAYPTVNIGCVQDGCAAERFPPVPSEPRKVFRLGDDGTAMPIFTANQNSIAIKRSGVIMCIGYVETANVWTPLTVNVDSLLNTRTTAEIVPALDGIDFRVFSFYSKVTTEILGEVIDPQTIGINYEPKYHTLEAVTVLPGTRYKGAFLGSFNLNANKYWFAVDRSVPSFNVRMVRYKHDWR |
| Ga0308413_002751_6813_7697 | F028964 | GGAG | MVMLPDRREYYFVTAIERHKTYYLIRGETFLRYLRDYYPDRYAGTSDAQWSGDAARGVLVSLRPIENIPAHFSITASRELWIIVPDNVPPSVNVSTSFAWASRLESAKEITRLAHAKGFPLVWWFECGRWCEAKNETGNYRIEPSIALVFGHGLSRNNIFRPRWSGTINFETWIYDRSQPTAGVALGYGLGVDREVSRARSPRGLFNSWMYWEDRIDGRATGTSAAAQAALMRWRPVEAGAGQAYSQATPRLGDQVFMVAGDNHRCAGIAYVVGERYTVAGAQVDSVELGVMQI |
| Ga0308413_002751_817_1680 | F038570 | N/A | VKDGSVTVNHNDAVVEELGRSVSDLIVFSQRHAEGELELQCTYEDILYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTESWSFIGRSVQANALTGSLPTRIVTPVLSRHASWFVDNVGTAHGTTPIPGTVIEAELSINTNRHLKMFEGPQPLDWGEGRWEAQLSITAEFNATAKAWVDALLTDRVARNIRVSFVETASTRELRIDFVGLIAESPELFGDRDGNMTVEVTFKALVAAPLNNWLQIRTINGVGTLP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |