NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308413_003019

Scaffold Ga0308413_003019


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_003019 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8275
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F012577Metagenome / Metatranscriptome279Y
F037517Metagenome / Metatranscriptome167Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_003019_1730_2119F072382AGGAGGMKTVYHTKDVWFPPFSIKIEPERGTWFADVYVRYAENPSLDTKYNAYIGANDFLAGTPIPARYRRDLAKAIESLFDYGLVGLVIYPTKEGWGVNITLCSELEIQYLHGAGATPADAIRNSNYPPPLRNV
Ga0308413_003019_2303_2632F007404GGAGGVDIIEVFQLLAAGHVGLTATDYLWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPALIDKIAGFVERRRK
Ga0308413_003019_4004_5452F012577AGGAGMLVAITRPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSKTVWRGQIERIEEARDGGITWHALGFGALQRDARISAVQNMTDMTRWTPVGQGFFSILTYEPRPDLWHYETNSNGSTVTITIRTKSTFNISASTLFFVAYVYGQPERYKKITTNERLTVLSLTRTGLAQGLNCAPVTGVLPPPDNRLTTGSWNALFTSPATVVATNCIGWVIGVRAQGNETSPGATSVTFSLAINNPDGVGIDDAALSTALIEHGGCCRVYLPSQTYVSLEKPDANLREIIEQNEVGLKYSHKRFLRDRPRPTIDFRTDSTLVWRFPETTRVVDISKAPSRIFAQYRGYWTDHLTATTTIRSLESRRQLARRVAGVGEYSSKTIADARRDEAAVALDRQIAPLTVELDNARYELMTRTGETIPNWAADVSDYAIVPGYYRNAKITARTITRERTTYTVSFNPDDFVTALR
Ga0308413_003019_5463_6680F037517GGAGGMRIRRIGTFVFTSDTNIVFDVNNQDAPGIGFNVNALFDPQPFAAEIAFHREDRLQALDAVSRFARELYSYAQRRQNARLAVAGGALVVAEDANGGTTLRSYLRDGSVTLLSVEATSAGVIARVRVTGTLINPFLDYTPVQNTLLSLLPYELRVVELSELSDAYLYKSQLLYSVSNMTGLYNALLAVEELESATGASRIQAISPASVSSGITMQNQSWNAGWQTLTRAIFSSATSGTITYNVTTVNPKDVYRLFVEIFCPTAPSANARYIVSWDGQPQIAETITGDRSWYAPALFVHRDTAVSLTLEIQNVPNNTLVMPIVLIPTDGVSVWSVITPPTLQSFHTLDLQSAMSRPFETNPAGTVYGAPGLISSRYIAVFNGVMSGTITTASATLNIRSRRIEPAAFA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.