NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_004353

Scaffold Ga0308413_004353


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_004353 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6553
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002372Metagenome / Metatranscriptome566Y
F011940Metagenome / Metatranscriptome285Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_004353_262_615F000855GAGGMEWLEDFWSKIVSWFDELSAGVHNGIIAWINSLVDIWNGWMDSLLHPAQAMPSIPALRWIVDWLGDIADYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308413_004353_2876_2998F054900AGGAMISHGCANIGAMEYERAVLQLLVYGVTLIMLYVVDGWSRG
Ga0308413_004353_5944_6264F002372AGGAGMMPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVREDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSMGGSDSWV
Ga0308413_004353_625_963F011940N/AVPRYTLAPLTPPPAAGDDVSWDGSLVGDLLDGLEALGRAVAPPASRICDLPVPVLADAPEYGFKDALPDFVAGLCAFFGVASPVLGFVRLPVTLMVVGFVFWTAWKVFRSLS
Ga0308413_004353_92_259F001381GAGMQYVVATLYVLLWLALAAAAALWLPLWALPAALVQLAVAYVMLRAVWLTAAGGDD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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