NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_004470

Scaffold Ga0308413_004470


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_004470 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6461
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026171Metagenome / Metatranscriptome199Y
F026459Metagenome / Metatranscriptome197Y
F029920Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_004470_2656_2958F026171GGAGGMNRSLRKLREAVKVARLADMPAPKALKALADMPEARAFQIEPEVLRRMLLESLPEQYATFLFDQAGYRVEMSLADLAYFAKHDEILVELVVSIILYLDKE
Ga0308413_004470_3376_3963F026459AGGAGGMNKSLSQERIEALRAINAIESTIRPSVNSIGMFTAALTAMGSGETVQRALYRVERRAPNDVIKDAEELIDVLYEIGEGVIALKLERRLKELREGESSDAIAGLWELVDLLPHDAYMAFGFAVESAQARCGEHPNPQELLLDIDFDREGFRFGPAWEFWGNRSSEAIRVARAAFIANLLYSAGLGDEPDYPESLAD
Ga0308413_004470_5812_6129F029920N/AMISMSDLEPAFREERPLKGFIAPGLALSYQPREHLVIGRAGRRLDAEDIALAVALAREAFIFLVREPQRKVVELNGIAWYLARWPLQRELVADHLPQIKMERRNR
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Institute for Fundamental Biomedical Research
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