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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033886 Open in IMG/M |
| Scaffold ID | Ga0308413_004925 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6074 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F008135 | Metagenome / Metatranscriptome | 338 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308413_004925_1729_1902 | F001381 | GAG | MQYVVATLYVLLWLALAAAAALVLPRWALPAALVQLAVAYVMLRSWLTAAAGGDDGA |
| Ga0308413_004925_2090_2545 | F000642 | AGGAG | MQEISVALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLAASYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK |
| Ga0308413_004925_3440_3751 | F004024 | AGGAGG | MHSERDYLRQPSSLSDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRSER |
| Ga0308413_004925_4796_5017 | F008135 | AGGAG | MNDPRTERLLVSAGTSIARVLDARQRHAVALALEVCWYIVAALPPDDELTFGDMVRLLRWFVTGFREADDGDE |
| Ga0308413_004925_5001_5282 | F002795 | GGAGG | MMATNSGLFLRGMVAAYREFVSRKDGKMFRIITVFGDLVVGEAVLCAVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIRLYVDEGVR |
| Ga0308413_004925_5282_5599 | F002372 | AGGGGG | MPTRREDALWSVVHQRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVREDAPPTVLRSAYVQANRQWERHSEFALRIVEAALQLVQEYRTDPSMGGSDSWV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |