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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033886 Open in IMG/M |
| Scaffold ID | Ga0308413_005933 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5445 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F007172 | Metagenome / Metatranscriptome | 356 | Y |
| F009403 | Metagenome / Metatranscriptome | 318 | Y |
| F012676 | Metagenome / Metatranscriptome | 278 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308413_005933_225_494 | F012676 | GGA | VVTDSVERNDMNSTKIAAGWDGSPMSLTHPEHGWIRFLEARGIAYATYLSEPAGWRIVVEEEEKFMRLIPKLRKYNIHGIYEWTYDIHP |
| Ga0308413_005933_2321_2644 | F009403 | AGG | VFRITRRGRGSGRAPALSVIRSGVRLEVREGRYGQGACYAYCDVDDTLAAHTLLLTFADMRARVIHIHDSLPLISERKFFDACSGCRPVLPDCDSLAGADADDSFFQ |
| Ga0308413_005933_4248_4601 | F000855 | AGGAG | MDWLEDFFSKVVSWLDERTANIYNAVVAFVNVLVDVWNGWMDALLHPAQAMPSIPELRWVVDWLGGIADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS |
| Ga0308413_005933_4604_4768 | F001381 | GAG | MQYVVATLYVLLWLALAAAAALWLPIWALPAALVQLAVAYVMLRAVWLTVARDD |
| Ga0308413_005933_476_718 | F007172 | AGGAGG | MTTPNALTALQRRAFADALRAAKNNAYCRAVGGFVIVRMSDGTIDWFPAGQPPHRGGEPDRRATILGKWRWNHKRWSRIA |
| Ga0308413_005933_4955_5410 | F000642 | N/A | MQTISIALAVCACAAAIWYMRRREAGAGRVRGWLLLYDDLGGWRALPAAYSDSGIVADGVTYPASLPVLRVDRTLIWIARCDAAALVEHQALERARESAALASLWRGGGQWIDFLRIVGVVLPAAFAYFTWAQVSALQALVAQILTLVGER |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |