NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_007865

Scaffold Ga0308413_007865


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_007865 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4521
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F011940Metagenome / Metatranscriptome285Y
F037242Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_007865_3118_3453F011940N/AVPRYTLAPVTPPPLGDDVSWDGSLVGDLMDGLEALGRAVAPPTGRICDLPVPVLADAPEYGFKDALPDFVAGLCSFFGIASPVLGFVRLPVTLMVIGFVFWTGWRVFRSLS
Ga0308413_007865_3463_3816F000855AGGAGMDWLEDFFSKVVSWFGERAASIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPELRWIVDWLGGMADYTRLMYMLVDYVAYAAIVQQALTAQLAIVTIGLAFRAWLVIRRVVLVS
Ga0308413_007865_3819_3986F001381GAGMQYVIATLYVLVWLALAAAAALWLPRWALPAALVQLAVSYVMLRSWLTAAAGGDD
Ga0308413_007865_4170_4520F037242N/ALARFDVQTISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRTLPAVYGDSGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWI
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