NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_008198

Scaffold Ga0308413_008198


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_008198 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4397
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_008198_1178_1405F008135AGGAGMNDPRTERLLVSAGASIARVLDARRRHAVALAIEVCWYIVAALPPDGSVTFGDVVQLLRWFARGFNEDVEGDDVD
Ga0308413_008198_1424_1747F002229GAGGMVTLLTMDGVEDVDYTPSDAEIRVALDDRALYGMVLNGVTWIRLASGFGWWTVIRNRRVTATLAALGWCWVVDGLGVRGYWSPALASIPAEVRALCGGYVEDEDEED
Ga0308413_008198_182_598F015735GAGGMVVYHHWSVEWHPRSDPPGGLLRVVCIARRAVSDPFAGPGPFPADVDCAVRFWNLVASGGARGHGAGYEVAWRVAVVADDADGDAPPDGAWSDDPTYRARRRLLRWVMRLQCPLFADHFAVEHFRDHPEYFGLLEPGA
Ga0308413_008198_3776_4240F000642N/ALARFDVQTISIALALCAVGAAIWYMRRREVSGRVHGWLVLYDDLGGWRALPAVYGDAGVVADGVTYPASLPALRVGRELIWIARCDAAALIEHQALERAREAAALASLWKGGGQWLDFLRVVGVVLPAAFAYFTWAQVSALQALVAQILALVGK
Ga0308413_008198_599_877F002372N/AVHQRASHLRALLDVLDDVDMSIAYELHYYPYAIVELLRVRDDAPPVVLRSAYVSANRQWERHSEFTLRVVEEALRLVEWYRADPSMGGTEGV
Ga0308413_008198_913_1191F002795GGAGGMMSTNGLVLRGMVASYREFTSRKDGKTYRIVTVYGDLVAGEIVLCAVDGYDVFVDSPDYSRGEIVELPARLQFLRDGSGRPVIKLYVNEGVR
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