NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_009402

Scaffold Ga0308413_009402


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_009402 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3994
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_009402_1188_1409F002978AGGMRDWRVAIVPWADRRLWFLQARRGRRVVWGVVYDAGDPDSVALARRAVATLWAAGADCSALPAVLPGSPAPGA
Ga0308413_009402_1412_1867F000642GGTGGMQEIGVALAICAVGAAVWYMRRRDAGAGRVRGWLLLHDDLGGWRVLAASYGDAGIVADGVTYPASLPAVRAGRELIWIARCDAAALIEHQALERAREAAALASLWKGGGQWIDLLRVLGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0308413_009402_2055_2228F001381GAGMQYVVATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGGDDGA
Ga0308413_009402_2228_2581F000855AGGAGMDWLEDFWSKIVSWFDELSAGVHNGIVEWINSLVSIWNGWMDALMHPAQAMPSIPELRWVVDWLGDIADYTRLMYMLVDYVAYASIVRQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308413_009402_393_701F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
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