NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308413_010232

Scaffold Ga0308413_010232


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_010232 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3761
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F009403Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_010232_2256_2609F000855GAGGMDWLEDFWSKVVGWWDHTSANMYNGIVAFVNSLVEIWNGWMDALLHPAQAMPSIPALRFIVDWLGGIVDYTRLMYMLVDYVAYAGIVQQALLAQLAIVAVGLGFRAWLVIRRIVLVS
Ga0308413_010232_251_574F009403AGGVFRITRRGRGSGRAPALSVIRSGARLEVREGRYGQGACYAYCDVDDTLAAHTLLLAFADMRARVIYIHTDIPVISERRFFDACSRSRSGALPDADSLPDADSLSDRA
Ga0308413_010232_2609_2776F001381GAGMMQYVVATLYVFVWLALAAAVALWLPRWALPAALVQLAVAYVMVRAVWLTVARDD
Ga0308413_010232_2973_3428F000642GGAGMQEMSIALALCAVAAAVWYMRRRDAGSARVRGWLLLYDDLGGWRALPAVYGDSGIVADGVTYPASLPALRVGRELIWIARCDAAALIEHRALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308413_010232_3428_3658F002978GAGMSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDANDPDSVSLARRAIATLRAAGADCSALPAVLPGSPGAPGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.