NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_013669

Scaffold Ga0308413_013669


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_013669 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3065
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_013669_1113_1343F008135AGGAGMSDPRTERVLTEAGAGIARVLDARQRHAVALAIEVCWYIVAALPLDGSVTFGDVVRLLRWFARGFNEDVEADDAGD
Ga0308413_013669_1330_1608F002795GGAGGMPVTSGLVLRGMVAAYREFTSRKNGRVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVSFPARLQFLRDGSGRPVIRLYVDEGVR
Ga0308413_013669_765_1094F002229GGAGGMVTLLTLDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACIPGEVRALCGDSCVDDDDDEEE
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