NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_014653

Scaffold Ga0308413_014653


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_014653 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2915
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F009403Metagenome / Metatranscriptome318Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_014653_140_310F001381GAGMMQYVVATLYVFVWLALAALAALVLPRWLLPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308413_014653_2334_2612F009403N/AVLSVVRAGARLEAREGRYGQGALYAWCDVDDSLAAHTLLLTFADMRARVIYICDPLPLISERRFFLICSGDVDPDSLPDSDSLPDALPDADS
Ga0308413_014653_310_663F000855GAGGMDWLEDFFSKVVSWFDERAANIYNGIVAFVNSLVEIWNGWMDALMHPAQAMPSIPALRFIVDWLGGIVDYTRLMYMLVDYIAYASVVRQALLAQLAIVAVGLGFRAWLVIRRIVLVS
Ga0308413_014653_674_1102F011940N/AMTRTPSLTLTPSPTWTALPTATRDPYQPPSAVPRYTLMPITPPPGGDDMSWDGSLVGDLMDGLEALGRAVAPPAGRICDLPVPVLADAPEYGFRDALPDFVAGLCGFFSVASPVLGFVRLPVTLLVVGFVFWSAWRVFRSLS
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