NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_017976

Scaffold Ga0308413_017976


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_017976 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2527
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F074922Metagenome / Metatranscriptome119N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_017976_1659_2297F074922GGAMLAQFLNVALDIQQTPAYAGIRVTDGTLMASDGVVLVAYKLSAEYLRGEGMIPPATARALAALANEVYLEYVEVDGTAVSLVTREQYADRAERLTVSFPPFACRVLRIESFLPRCTPPDATLLCEAPSLKLVKAARLTDFVELVDKPVRGSELFQLKLPDAKTWYSVRQLREGLRLFRARDSVGVYKNDQGWLSFRDDWGRLFAITPFVKRN
Ga0308413_017976_320_646F002982GGAGGMKIQFERHPHTICAVLTEPGECDRIINVARASDAIDALALDIHTAALKPLDVLFALPRVVLVEIERREGGWCVEVAYWNKGLGTLAQYEAEAATLSEALARCVWALAG
Ga0308413_017976_718_1074F087842GAGGMTTIRVWGGYVAAGDARVYLVVFDGERIGGMSERNVQRTFYRTRDGRVVVHEVRIGKRRCGRTYDQALVYVFSSITEACAHLDVHPQHIAQTRGEATLPRVDAPTLTLDEWARGVGTY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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