NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_019013

Scaffold Ga0308413_019013


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_019013 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2432
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020833Metagenome / Metatranscriptome221Y
F046762Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_019013_214_519F020833GGAGMTNKLINDLHAHHVLGDSPREAVLLVADHPLANEITITPDALKQALCTALPECGEALFDLLGVRVPYSLAALCYLALYDQWLCYAMSLTLETLLTNRKDVV
Ga0308413_019013_527_913F046762N/AMTRSRFDFRIKFDANREVFVLTVAPEVTSLDGRGVAPKAYEAHAICMSPNLFVVRIPDNEIPSDFVAVGDNNLPRGIELIELRFVGSKVCFTFQISDEALLRVTPTVYRAWMQSLIQAGVSLDAFARE
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