NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_022502

Scaffold Ga0308413_022502


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_022502 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2157
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_022502_1186_1359F001381GAGMQYVVATLYVLLWLALAAAAALVLPRWALPAVLVQLAVAYVMLRSWLTAAAGGDDGA
Ga0308413_022502_1362_1715F000855GAGGVEWLEDFWSKVVSWWDHASANIYNGIVSFVNSLVDIWNGWMDSLLHPAQAMPSVPALRWVVDWLGDIADYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308413_022502_1728_2015F011940GGTGGVSWEGSIVGDLMDGLEALQRAVAPPAGRICDLPAPVLADAPELYDMRDAFPDFVAGLCSFFGIASPVLDFVRLPVTLVVVGFVFWTAWRVFRSLS
Ga0308413_022502_296_538F002978GGTGGMSVRDWRVTIVPWADRRLWFIQARRGRRVVWGVVYDAADPESVSLARRAVATLRTAGADCSALPASLPGAPPGAPGAPGA
Ga0308413_022502_542_997F000642GGAGMQEMSIALALCAVAAAVWYMRRRDAGSARVRGWLLLHDDLGGWRALPAVYGDAGIVADGVTYPASLPVLRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWVDLLRVMGVLLPAVFAYFTWAQVAGLQALVAQILSLMGGT
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