NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_024193

Scaffold Ga0308413_024193


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_024193 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2045
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F080999Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_024193_1504_1809F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIATPRLYDRIAPVIESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRER
Ga0308413_024193_237_473F008135AGGAGGMRVVNDSRTERVLTEAGAGIARVLDARRRRAVALAVEVCWYIVAALPPDGSVTFGDVVQLLRWFARGFNEDVEGDDVD
Ga0308413_024193_2_217F080999N/AMVASYREFTSRKDGKTYRIVTVYGDLVAGEIVLCAVDGYDVFVDSPDYSRGEIVELPARLQFLRDGSGRPVI
Ga0308413_024193_483_821F002229GAGMEADMVTLLTLDGVEDVDYTPSDAEIRASLDDAGLYGMVLGGVTWMRLSPGAGWWTVVCNRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRVMCGCAEDEDGDDEE
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