NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_027895

Scaffold Ga0308413_027895


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_027895 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1843
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_027895_1177_1404F002978GAGMRDWRVMLVPWADRRLWFLQARRGRRVVWGVVYDADDPDSVALARRAIATLRAAGADCSALPSPLPGAPPGAPGA
Ga0308413_027895_2_349F000855N/AWLEDFFSKIVSWVDELSASIHNGIIGWVNSLIDVWNGWMDALLHPAQAMPSIPALRWIVDWLGDIADYTRLMYMLVDYVAYAGIVQQALIAQLTIVTIGLAFRAWLVLRRIVLVS
Ga0308413_027895_349_516F001381GAGMQYVIATLYVLCWLALAAAAALVLPRWALPAALVQLAVAYVMLRSWLTAAGGGGD
Ga0308413_027895_713_1168F000642GAGGVQEIGIALALCAVAAAVWYMRRRDAGAGRVTGWLLLYDAVGGWRVLPASYGDAGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHCALERARESAALASLWRGGGQWLDLLRVMGVLLPAAFAYFTWAQVASLQSLVAQILALVGER
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