NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_028558

Scaffold Ga0308413_028558


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_028558 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1810
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_028558_492_824F002982AGAAGVNVKFQFERHPHAICVVLTDAGECDRIITVARASDAIDALALDIHTAALKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308413_028558_66_473F087842N/AVERRENTWRFFVVNGGTKMITIWSGYIAADESRVYLITFDGERIGGVENGRNARRTFYRVYDGRVVVHEVRIGRRRCGRTYDQALVYVFGDLDQACWGLATNRQRIAQTRDDAALPPVEAPTLTLDEWTCGVGTY
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