NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_029827

Scaffold Ga0308413_029827


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_029827 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1752
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_029827_763_1197F022362GGAMIANLLDAVIDAINGPPLAASVAATKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIETVVNDVNSIASRLTSEEVLERSDIAYAFDSILFSDPFYEIEEVFDESSFVRASVTARYAVLESL
Ga0308413_029827_80_421F013092N/AMNAILNDFFETLLRSRSVRLRLPNGFEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRASDLPAGYWPRVADEIVNVATSQRYIVVRAIGGVHATTSSDPYGFLVRVWTRLAS
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