NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_043461

Scaffold Ga0308413_043461


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_043461 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F040512Metagenome / Metatranscriptome161N
F057955Metagenome / Metatranscriptome135N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308413_043461_103_360F076974AGGMDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESILVTDGKLKVAFCVPLFGVTERLLSLKRDRLAESQSPEQLRMPL
Ga0308413_043461_281_553F040512GAGMFDLLANVTVAGLSVVSARVLEQYNWFQRLAPETKRLIAVAIAAFIALAMHMIGAIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308413_043461_546_824F057955N/AMIDLIEFFTTYGVLGVVALIAMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDIGRLIDKAETTIEELEKAKSLRKDV
Ga0308413_043461_821_1231F008994GAGGMRVTRFAIDENGRALFPDYFIVDDNTRLALAMYSANINVQGIVDEGLAQTPWLSTQWPGRTVSFDEWRNAFATNGYSFPQYHAQIGERVRLSELVDINRAFVELFMNGVDLNDSLNAQTHRELLTERNVDLVDFFK
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