NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_047703

Scaffold Ga0308413_047703


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_047703 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1240
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_047703_2_334F018115AGGAGMSDEEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLQHKCAPALLGEFINRHWNDAISDPSASAALRLALRVTQALERIEDERDRRAASWWFQLGLVPSARS
Ga0308413_047703_327_743F008499AGGAMKSRSKSEPRWKRKERSVLKALQATFGRVGDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARFGRIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERADE
Ga0308413_047703_727_1194F004307AGGAMFKELISNGNHSERPELNGAYIGRFLGVKERQRPTFETRLSPEPVMEDVFVFEFEVEDDDGNPLRVSKWVRKPARLSHPGKSGKVTNLYKTLAALYGVAQMTDAQLERAEEFIQEAVGREYQLTLETKPSGWCEIVHIAPVRARRKEKQIDEVPF
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